Variables saved in the trace¶
The trace by default contains the following parameters in the SIR/SEIR hierarchical model. XXX denotes a number.
Name in trace |
Dimensions |
Created by function |
---|---|---|
lambda_XXX_L1 |
samples |
lambda_t_with_sigmoids/make_change_point_RVs |
lambda_XXX_L2 |
samples x regions |
lambda_t_with_sigmoids/make_change_point_RVs |
sigma_lambda_XXX_L2 |
samples |
lambda_t_with_sigmoids/make_change_point_RVs |
transient_day_XXX_L1 |
samples |
lambda_t_with_sigmoids/make_change_point_RVs |
transient_day_XXX_L2 |
samples x regions |
lambda_t_with_sigmoids/make_change_point_RVs |
sigma_transient_day_XXX_L2 |
samples |
lambda_t_with_sigmoids/make_change_point_RVs |
transient_len_XXX_L1 |
samples |
lambda_t_with_sigmoids/make_change_point_RVs |
transient_len_XXX_L2 |
samples x regions |
lambda_t_with_sigmoids/make_change_point_RVs |
sigma_transient_len_XXX_L2 |
samples |
lambda_t_with_sigmoids/make_change_point_RVs |
delay_L1 |
samples |
delay_cases |
delay_L2 |
samples x regions |
delay_cases |
sigma_delay_L2 |
samples |
delay_cases |
weekend_factor_L1 |
samples |
week_modulation |
weekend_factor_L2 |
samples x regions |
week_modulation |
sigma_weekend_factor_L2 |
samples |
week_modulation |
offset_modulation |
samples |
week_modulation |
new_cases_raw |
samples x time x regions |
week_modulation |
mu |
samples |
SIR/SEIR |
I_begin |
samples x regions |
SIR/SEIR |
new_cases |
samples x time x regions |
SIR/SEIR |
sigma_obs |
samples x regions |
SIR/SEIR |
new_E_begin |
samples x 11 x regions |
SEIR |
median_incubation_L1 |
samples |
SEIR |
median_incubation_L2 |
samples x regions |
SEIR |
sigma_median_incubation_L2 |
samples |
SEIR |
For the non-hierchical model, variables with _L2 suffixes are missing, and _L1 suffixes are removed from the name.